PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019165181.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 257aa    MW: 27030.8 Da    PI: 8.1542
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019165181.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.30.000151351721355
                     HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R+++ ++++ L++l+ +      +K + a++L +A+ YI+ Lq
  XP_019165181.1 135 REKLGDRIAALQQLVSPF-----GKGDTASVLHEAMGYIRFLQ 172
                     89999***********98.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MADDDPLGGA GSYSQLLFGD DDVVSLGTDS DGCLNFSSSS FMSSGGGNSP KMLCFGTKEC  60
RDLRPGKVTC SEDSSSASSV TTTRNHKANV NRKRNNGAAE NKDSDQERGK AANQGNGKKN  120
KPENPKGTTH AKGKREKLGD RIAALQQLVS PFGKGDTASV LHEAMGYIRF LQEQVHVLCS  180
PYLNPHPSSS QRHRQGGGEA MGSGGGNPPN MRSRGLCLVP VDLTLHVAHS NGADFWSPAA  240
AAISVSEPNP PPHSTLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.12e-39bHLH family protein