PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019165219.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 323aa    MW: 36464.8 Da    PI: 9.1717
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019165219.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.11.1e-15114203198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k ++ps+v    +l lpk f++ +   +++++ ++l de+g++++  +  ++++    l++GW+ F  +++L  gD+++F+l++  +  l+v 
  XP_019165219.1 114 FIKCMLPSNVAHGFWLHLPKAFCDMYL--PTCDTNIILVDEWGNEYKTSYLLERHG----LSAGWRAFSISHRLLKGDILIFRLIEPCK--LKVD 200
                     89*********************9885..57999****************777776....***********************997443..5888 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  XP_019165219.1 201 IVR 203
                     876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
METKHSNVKR PVSEICSHKV RLSHSLSTST PAASSSKTKR KMPLESKEKL VSKKRKILKS  60
KAKQEKSNNP KKSESIKRKR ATFSDMYDDV EAKFSVLERA ERVLSSLSDE FPSFIKCMLP  120
SNVAHGFWLH LPKAFCDMYL PTCDTNIILV DEWGNEYKTS YLLERHGLSA GWRAFSISHR  180
LLKGDILIFR LIEPCKLKVD IVRVNGRDVV DAALCLLKFD ASVNTTDPDL SRKDTRKRKS  240
LVKFIEPYIH NVCKPEANVQ VEGQSALDCC SPNIVDQAEH NSKDSGSEDF KGSDIANHPQ  300
SNEFCSSKTS FLCDHPRDGV ACR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13956KRKMPLESKEKLVSKKRK
25379KKRKILKSKAKQEKSNNPKKSESIKRK
3235240TRKRKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-32B3 family protein