PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019165267.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 261aa    MW: 27866.2 Da    PI: 7.0485
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019165267.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00052106128123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+k F +   L  H  +H
  XP_019165267.1 106 YKCSVCDKAFASYQALGGHKASH 128
                     9***********99998888877 PP
2zf-C2H214.40.00011161183123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+ksF++   L  H r+H
  XP_019165267.1 161 HECSICHKSFPTGQALGGHKRRH 183
                     78*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MALEALKAAA AVAPKMPPPP LGEVDFHSFK KRRSSKRPRT ESPQPSQSEE EYLAMCLVML  60
ARGEEPRRRI VAEEAAGEAE KESEEATPHP PPPSPPKSVQ ETVQEYKCSV CDKAFASYQA  120
LGGHKASHRK YATAAAAEDN HPSTSTSVTA AGALIPSGKP HECSICHKSF PTGQALGGHK  180
RRHYEGKLGG GGSRSGTSSD GAVISSRTPL EFDLNELPPS PELDLRLSID CGQPSQPTTG  240
DHEVESPMPA KKPRLSFPET A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-35C2H2 family protein