PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019165269.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 189aa MW: 20530.2 Da PI: 7.3738

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019165269.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.2	3.5e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C++lr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l+++pe++r+++++sl+ eA+ r+ +Pv+Gavg++++++++++q+ XP_019165269.1 2 SCNGCRILRKGCNDNCILRQSLqgietPQAQANATVFVAKFFGRAGLMSFLSSVPESQRPALFQSLLLEACGRTVNPVHGAVGLLWTGNWHVCQA 96 6********************************************************************************************** PP DUF260 91 kaelall 97 ++e++l+ XP_019165269.1 97 AVEAVLR 103 *998765 PP

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence
MSCNGCRILR KGCNDNCILR QSLQGIETPQ AQANATVFVA KFFGRAGLMS FLSSVPESQR 60 PALFQSLLLE ACGRTVNPVH GAVGLLWTGN WHVCQAAVEA VLRGGTPRPL PEYTIPTPSQ 120 ESDEVAGDLD LGLTTAARMT GGGRGYRRVE KRRADTPSEE SETSTLESGF VYHLSSHQSS 180 ETNLLRLFF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	9e-65	LBD family protein