PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019165299.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 220aa    MW: 24758.8 Da    PI: 6.0996
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019165299.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.51.3e-162064145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    k+i+n s r+v fskRr g++ KA+EL++LC++++  i+ s  gk
  XP_019165299.1 20 KKIDNVSHRHVAFSKRRIGLFNKASELCILCGTQAVAIVESYGGK 64
                    68*********************************9999887775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MENKTGKKKQ TQGRRKIEIK KIDNVSHRHV AFSKRRIGLF NKASELCILC GTQAVAIVES  60
YGGKRVFTFG HPSADAVIDR FLSNAPRPAS PEPYSPEEEN VAQLYHRAWQ ELAAEKEKIR  120
LEEEEERHHG CRGDNWWHLP IEHMGATELG EFTAALNELK KKAVLRSGEL VAAAAIIADN  180
NNDPNNNNLS SSEVLTMLMN NNDDIVGDCF NWMAADDIYD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-26M-type_MADS family protein