PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019165300.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 210aa    MW: 23689.7 Da    PI: 9.8125
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019165300.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF689.1e-221663249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +ie k   qvtfskRr g++KKA+EL++LC++e+a+i+fs+ gk + +
  XP_019165300.1 16 KIETKNHLQVTFSKRRSGVFKKASELCTLCGVEIAIIVFSPAGKAFSF 63
                    69999999***********************************97766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MAKKPNMGRQ KIKIAKIETK NHLQVTFSKR RSGVFKKASE LCTLCGVEIA IIVFSPAGKA  60
FSFGHPNVDP ILDRFLSRNP HPVSGAALHL AEAHRSAAAV CEMSLQLTQV LAASEMEKKR  120
GEMVGRMREE RRSRQYWWEA PITELGLPEL EQVMIAMDEL KKNVASQIGK IMAAETLLDL  180
EETKSQRIMI NTDNNTLLLH HQALQTYLWI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.19e-49M-type_MADS family protein