PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019165351.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 444aa MW: 49738.3 Da PI: 8.5208

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019165351.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.4	1.5e-14	15	102	5	98
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++++v+ + +l++p f+e++g+ s +++l+ +g +W v l +k ++r+++t+GW++F + + g f+ F + ++ +f v++f+ XP_019165351.1 15 IITPSVFDQPQLRIPDGFVERYGHR--LSGEVKLTVHTGDEWCVSL--KKVGKRVLFTDGWRKFMEYYSIGIGYFLFFIYRKSCCF--DVHLFD 102 578999**************966..8889***********..*****************************9988999..777776 PP
2	B3	53.6	4.1e-17	339	423	7	96
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 + ++s++l +p fa+eh + +k + ++d++g+sW++k kk+ +vl+kGW Fv++++L +gD + F+l++ ++ +lv+kv XP_019165351.1 339 EYNITSSCILHMPPVFAKEHLPI--IPKNVEVQDSDGNSWNIKW--IKKP--CVLSKGWAAFVREKNLAAGDACGFELIKYlQDDNLVFKV 423 34445679**********533..5678***********..8888..78*********************88776666666655 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MPTLPCSSSP CFYRIITPSV FDQPQLRIPD GFVERYGHRL SGEVKLTVHT GDEWCVSLKK 60 VGKRVLFTDG WRKFMEYYSI GIGYFLFFIY RKSCCFDVHL FDMTATEIWD LPSTNANAER 120 STHISQDLQF TKEKCVGISD CGGSDDGNRT VKQLDDLKCN QVHENLADLS GLGSGCKRQR 180 AATRWVNVQS SYRTRGKGKM FGEEGSISGA ENVPDDGYSN KPVFAKSLLG SESRHNNDSA 240 GLIVENANNQ QISGKKGTLV SDDGKSNSAD RLSPIFPNCK TDSEGSNIKQ EKKRRSVSSK 300 RSSKHIMQRQ ATAQEKERAS RDAKMLAPNN PYFTVSLKEY NITSSCILHM PPVFAKEHLP 360 IIPKNVEVQD SDGNSWNIKW IKKPCVLSKG WAAFVREKNL AAGDACGFEL IKYLQDDNLV 420 FKVHIFRAVL DNANRCDEIS LVEV

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MPTLPCSSSP CFYRIITPSV FDQPQLRIPD GFVERYGHRL SGEVKLTVHT GDEWCVSLKK  60
VGKRVLFTDG WRKFMEYYSI GIGYFLFFIY RKSCCFDVHL FDMTATEIWD LPSTNANAER  120
STHISQDLQF TKEKCVGISD CGGSDDGNRT VKQLDDLKCN QVHENLADLS GLGSGCKRQR  180
AATRWVNVQS SYRTRGKGKM FGEEGSISGA ENVPDDGYSN KPVFAKSLLG SESRHNNDSA  240
GLIVENANNQ QISGKKGTLV SDDGKSNSAD RLSPIFPNCK TDSEGSNIKQ EKKRRSVSSK  300
RSSKHIMQRQ ATAQEKERAS RDAKMLAPNN PYFTVSLKEY NITSSCILHM PPVFAKEHLP  360
IIPKNVEVQD SDGNSWNIKW IKKPCVLSKG WAAFVREKNL AAGDACGFEL IKYLQDDNLV  420
FKVHIFRAVL DNANRCDEIS LVEV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	9e-21	B3 family protein