PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019165358.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 332aa MW: 37084.9 Da PI: 6.7842

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019165358.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.3	7.5e-10	145	192	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_019165358.1 145 SHSLAERVRREKISERMRYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 192 8************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence
MGSSMLFPPV QLQGLMNYDD QNLIQILENY GWIERPSDIG INYALSSCSP AATSAAGKKK 60 DDAFPPENLG RESFKRRKTD KAVAVAEEER KDRWKQKGCQ EDVRSSEQTD NNSKKEHSTD 120 TSKVTQDKKS DYIHVRARRG QATDSHSLAE RVRREKISER MRYLQDLVPG CNKITGKAGM 180 LDEIINYVQS LQKQVEFLSM KLAAVNPRLD FNIDSLFTKE MFQSSPSNFP PVGIISDVST 240 PSNLLQLVAS LGLEIGISPS DMPLRTTINS PVSLPKTLLN SSAINQQGQT CPIWDGELQN 300 LYAMEVQQGR SPSFTSQPFM GFVEGSNPRM EI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	58	78	KKKDDAFPPENLGRESFKRRK
2	75	95	KRRKTDKAVAVAEEERKDRWK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	3e-62	bHLH family protein