PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019165436.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family BBR-BPC
Protein Properties Length: 303aa    MW: 34041.2 Da    PI: 9.7182
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019165436.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind323.56.2e-9913031301
       GAGA_bind   1 mdddgsrernkg.yye.pa.aslkenlglqlmss...iaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllven 89 
                     mdd  ++ r++   y+  + +++k +++  lm +    aerda+i+er+ al+ekkaa+ erd+  +qrd+a+aer++al erdn+++al+++en
  XP_019165436.1   1 MDDGQENRRQRMdCYRgGHpQQMK-EQNAFLMNMkmlFAERDAAIEERDRALAEKKAAIEERDIVIQQRDAAIAERDNALRERDNAIAALQFQEN 94 
                     777766557777777753346788.44544554311145******************************************************** PP

       GAGA_bind  90 slasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad 184
                     +++ al  g++++  tk+  +l +++ ++++ s+  +r+   ++a pi+  ++e+ +++++k+ + ++++ +k  ++++k++++s ++ +++ + 
  XP_019165436.1  95 NMSGAL--GYRISGTTKHPSHLTTHRGNNFQSSCN-TRDAPVTDAVPISAVPSEVVKAQQRKQAKISRSNSTKSLDSPRKTKRVS-EDLNRHVTT 185
                     966555..899999999999888866677776665.5999999******999999998888877766666666666666644443.555555555 PP

       GAGA_bind 185 erskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGyd 278
                     + skae++ + l ++n++++Dest+P+PvC+CtG+ rqCYkWGnGGWqS+CCtt++S yPLP+ +++r+ RiagrKmS+++f++lL +L++ G+d
  XP_019165436.1 186 DGSKAEWDAQYLgSINQINFDESTMPTPVCTCTGVARQCYKWGNGGWQSSCCTTSLSEYPLPQLPHKRHGRIAGRKMSGSVFSRLLTRLSSGGHD 280
                     679*********88********************************************************************************* PP

       GAGA_bind 279 lsnpvDLkdhWAkHGtnkfvtir 301
                     ls+p+DLk++WAkHGtn+++ti+
  XP_019165436.1 281 LSTPLDLKNYWAKHGTNRYITIK 303
                     **********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MDDGQENRRQ RMDCYRGGHP QQMKEQNAFL MNMKMLFAER DAAIEERDRA LAEKKAAIEE  60
RDIVIQQRDA AIAERDNALR ERDNAIAALQ FQENNMSGAL GYRISGTTKH PSHLTTHRGN  120
NFQSSCNTRD APVTDAVPIS AVPSEVVKAQ QRKQAKISRS NSTKSLDSPR KTKRVSEDLN  180
RHVTTDGSKA EWDAQYLGSI NQINFDESTM PTPVCTCTGV ARQCYKWGNG GWQSSCCTTS  240
LSEYPLPQLP HKRHGRIAGR KMSGSVFSRL LTRLSSGGHD LSTPLDLKNY WAKHGTNRYI  300
TIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.13e-98BBR-BPC family protein