PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019165538.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 300aa    MW: 33080.7 Da    PI: 10.1249
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019165538.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding361.7e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G g W+tI +          R+  ++k++w++
   XP_019165538.1  5 KQKWTPEEEAALKAGVLRHGQGKWRTILKDPEfsgvlYLRSNVDLKDKWRN 55
                     79***********************************88***********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MGAPKQKWTP EEEAALKAGV LRHGQGKWRT ILKDPEFSGV LYLRSNVDLK DKWRNMSVMA  60
NGLGSREKAR LALKRIHQTP KQNESPMALA NVAQSDEDTS EAKPIATSSD SPRPGGSRRS  120
IIRLDNLIMD AINNLKESGG SNKTAISAYI EDQYWAPPNF KRLLSAKLKY LTATGKLVKM  180
KRKYRIATTL TLSERRRNTP ISLLEGRQKL SPKPDSDDID MLTKSQIDSE LSKMRSMTPE  240
EAAAAAAQAV AEAETAIAEA EEAAREAEAA EAEAEAAQAF AEAAMKTLQW RSTPRTMIRA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.17e-98MYB_related family protein