PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019165669.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 346aa    MW: 37928.3 Da    PI: 8.8956
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019165669.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.6e-12274319655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + a++L ++veYIk+Lq
  XP_019165669.1 274 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLVVEYIKDLQ 319
                     689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    
MNGDSQALCS DSLNSNPKQG LFSNTRELFM DSPNQNSSGL LRFPSAPGSC FENLSHGVDK  60
NGDNSTGNDG LDSKFNLGLI NGSAVLNSQL PPQYPWKIPG SVNLVETDHS GQPKLVSSFM  120
RQNSSPPALF SPQNGYARLR GDLGGCYRVG NGINGASSRC LSRLKPQMSN LSQITEVEKK  180
SYAGSVTDDD EKPGNGNSDT RFYSSEFPFS SWSDSPAVFS QGKTFNNADT QIGDLGPRPQ  240
ILSHHSSLPK TLQLQQSVPC KIRAKRGCAT HPRSIAERVR RTRISERMRK LQELVPNMDK  300
QTNTADMLDL VVEYIKDLQK QYKSLDETRA NCKCSAMQAP LSNRTV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.17e-61bHLH family protein