PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019165671.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 264aa MW: 29482.8 Da PI: 10.047

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019165671.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.9	9.8e-18	50	95	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l ++v+++G+ +W++Ia++++ gR++k+c++rw++ XP_019165671.1 50 RGHWRPHEDGRLRELVAKHGPQNWNLIAEKIP-GRSGKSCRLRWFNQ 95 899***************************.*********996 PP
2	Myb_DNA-binding	56.8	5e-18	103	145	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++T+eE+e+l a++++G++ W+ Iar ++ gRt++ +k++w+ XP_019165671.1 103 KPFTEEEEERLRAAHRMYGNK-WAIIARLFP-GRTDNAVKNHWHV 145 68*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence
MSFKAFESSS SGAFRFPPPP DLRFPPLGAA LGLEEPEKRS ADQTHRLCAR GHWRPHEDGR 60 LRELVAKHGP QNWNLIAEKI PGRSGKSCRL RWFNQLDPRI NTKPFTEEEE ERLRAAHRMY 120 GNKWAIIARL FPGRTDNAVK NHWHVIMARL HRHQTTGGAR RRQPRNHNNN NTMDSNNLND 180 ESAASTCTDL SLSTSSSSAL YMAGSSLKGV KAAEASGRRP ESSPDSVANN NTTGSEAEMC 240 GQNQTAIYDN NKMLFFDFLG VGAN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	3e-57	MYB family protein