PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019165851.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 291aa MW: 32237.5 Da PI: 10.0754

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019165851.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54	2.9e-17	158	212	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t++q Le+ F+++++++ + + LAk+l+L rqV vWFqNrRa+ k XP_019165851.1 158 RKKLRLTRQQSAFLEQTFKQHSTLNPKNKVALAKQLNLRPRQVEVWFQNRRARTK 212 678899***********************************************98 PP
2	HD-ZIP_I/II	122.9	1.6e-39	158	248	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rl+++q+++LE++F+++++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+L+r++++l++en+rL+kev+eLr +lk XP_019165851.1 158 RKKLRLTRQQSAFLEQTFKQHSTLNPKNKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLRDENKRLQKEVQELR-ALK 248 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MELGLSVGGD SNSIPTLKPF SFLQIPASAS AYEDQKNGRR GKDNNIGFCM AALGDEEPPL 60 QLALLPLSPP PLPCAAAQPR FPWLSHNLGS EPGFLSNLPG FLSSPNTSGA SSFPATGRKN 120 VRWWSRKRDM MTERRASSNN NSVGSDEDDE INGGGLGRKK LRLTRQQSAF LEQTFKQHST 180 LNPKNKVALA KQLNLRPRQV EVWFQNRRAR TKLKQTEVDC EYLRRCCETL RDENKRLQKE 240 VQELRALKTT SHPFYNHLPA TTLNICPSCT AATTPSAAAT NTARSLPKSE C

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	207	215	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	1e-54	HD-ZIP family protein