PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019165869.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 480aa MW: 51526.9 Da PI: 5.9638

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019165869.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	54.3	2.4e-17	308	354	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn Er+RRdriN+++ L++l+P + Kl+Ka+iL +A+eY+ksLq XP_019165869.1 308 VHNLSERKRRDRINEKMRALQQLIPRC-----NKLDKASILDEAIEYLKSLQ 354 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MNHHCAVPEF EMDEDYSPLP MIAPPSAAGL SGGAKKSAME DEIMELLWQN GQVVVHTQNH 60 QRSVKRSHGG DAAIPVPAAR EVVGSAEEEM ATSHHQPELF MQEDEMASWL HYPLVDDSPY 120 LSADLLYPSS SSAAAAVAPP RDFRASAPEV RRPPAPLPPI PPSGRTDVLR SQNFARLCRP 180 PAGPSRAAST VVESNDTPIV PSEYRDSHVA DSTAQVSGGN LGPRGGAMSG TEAAGASTGA 240 KEMTVTSSPD DGSGASVSAE KSTAPATAMD DRKAKGSETD DEGHNADTDF GYNAKKQTSS 300 KRSRAAEVHN LSERKRRDRI NEKMRALQQL IPRCNKLDKA SILDEAIEYL KSLQLQVQMM 360 SLGHGCGMIP MMFPGIQQYM PAMGIGMGMN PPVAPYPMGG PRFPMPAFPM PTPFSMADPS 420 RIQALNHTDP MLNSPHNSSH PPFPTQTQVT PSMNEMAEHS NKSKPCSSKD VENPTTLQCG

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MNHHCAVPEF EMDEDYSPLP MIAPPSAAGL SGGAKKSAME DEIMELLWQN GQVVVHTQNH  60
QRSVKRSHGG DAAIPVPAAR EVVGSAEEEM ATSHHQPELF MQEDEMASWL HYPLVDDSPY  120
LSADLLYPSS SSAAAAVAPP RDFRASAPEV RRPPAPLPPI PPSGRTDVLR SQNFARLCRP  180
PAGPSRAAST VVESNDTPIV PSEYRDSHVA DSTAQVSGGN LGPRGGAMSG TEAAGASTGA  240
KEMTVTSSPD DGSGASVSAE KSTAPATAMD DRKAKGSETD DEGHNADTDF GYNAKKQTSS  300
KRSRAAEVHN LSERKRRDRI NEKMRALQQL IPRCNKLDKA SILDEAIEYL KSLQLQVQMM  360
SLGHGCGMIP MMFPGIQQYM PAMGIGMGMN PPVAPYPMGG PRFPMPAFPM PTPFSMADPS  420
RIQALNHTDP MLNSPHNSSH PPFPTQTQVT PSMNEMAEHS NKSKPCSSKD VENPTTLQCG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	313	318	ERKRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.1	7e-44	bHLH family protein