PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019166019.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 366aa MW: 42317.3 Da PI: 8.7522

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019166019.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	42.9	8.7e-14	11	92	1	89
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ffk++ + + s+ l +pk+++ + + + s++++l++++ ++W++++ + ++++++++ GW +Fv++n gD +vF +d+ XP_019166019.1 11 FFKIFCQ--QNCSQKLEIPKSYM---DPERRYSRKVVLRNRTQKVWNIEI--TETRDACFFKHGWAKFVEDNSFINGDQLVFIYDHPAV 92 5666633..33445699**99...344557889***********..****************************9987544 PP
2	B3	35.5	1.7e-11	272	353	12	94
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EE CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvv 94 +++ l++p + +++h+++ + ++++ de+ ++W+ +++ ++ + r++l++GW++ ++ n ++e+D ++ +++ + e l v XP_019166019.1 272 RRDDLYIPMEVIKDHNIE--LPAKVIMCDEKDKKWKAYIKTWGDG-RTWLSGGWRQLCRWNLVQENDRCICEFVPSlgPELVLQV 353 5678*********866..8899***********888875.789******************9997633234444444 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MACAQKRIFS FFKIFCQQNC SQKLEIPKSY MDPERRYSRK VVLRNRTQKV WNIEITETRD 60 ACFFKHGWAK FVEDNSFING DQLVFIYDHP AVFDFFVIDQ FGCEKIIMEG EEARVKGLKN 120 NNGGGVNCQD NTFLVDYEVN MVTQVKKDED EMDAKEENND VGFQYHTRSK GKSCIIECGF 180 KRAGSVKKSD ASPKKKNVGA GKNDARAKKK DVSEEENDAS AEKVGVSDEK KDATLKKKKK 240 DVPDHFGLDI FSSGRFTQPK NPYFVTKIRP KRRDDLYIPM EVIKDHNIEL PAKVIMCDEK 300 DKKWKAYIKT WGDGRTWLSG GWRQLCRWNL VQENDRCICE FVPSLGPELV LQVTVIRRKD 360 LEAQPN

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MACAQKRIFS FFKIFCQQNC SQKLEIPKSY MDPERRYSRK VVLRNRTQKV WNIEITETRD  60
ACFFKHGWAK FVEDNSFING DQLVFIYDHP AVFDFFVIDQ FGCEKIIMEG EEARVKGLKN  120
NNGGGVNCQD NTFLVDYEVN MVTQVKKDED EMDAKEENND VGFQYHTRSK GKSCIIECGF  180
KRAGSVKKSD ASPKKKNVGA GKNDARAKKK DVSEEENDAS AEKVGVSDEK KDATLKKKKK  240
DVPDHFGLDI FSSGRFTQPK NPYFVTKIRP KRRDDLYIPM EVIKDHNIEL PAKVIMCDEK  300
DKKWKAYIKT WGDGRTWLSG GWRQLCRWNL VQENDRCICE FVPSLGPELV LQVTVIRRKD  360
LEAQPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53310.1	2e-12	B3 family protein