PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019166137.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 222aa    MW: 25267.2 Da    PI: 8.9085
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019166137.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.76.3e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien   rqvtfskRr+g+lKKA+ELS+LCdaevavi+fs tg+lye++s
  XP_019166137.1  9 KKIENINSRQVTFSKRRAGLLKKAKELSILCDAEVAVIVFSGTGRLYEFAS 59
                    68***********************************************86 PP
2K-box67.25.6e-239918316100
           K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      lq e++ L++e+ n+ + + +++G+dLe L++keLq+Le+qL +++ +++++K+++l+eq+e+++ +e++++ en+ Lr+++ee
  XP_019166137.1  99 DLQPEVNALRAELANMHKLHCRMMGKDLEGLNFKELQHLEHQLTEGILTVKDTKEQVLFEQLEKSRLQEEKIKLENQVLREQIEE 183
                     6899******************************************************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MGRGKIEIKK IENINSRQVT FSKRRAGLLK KAKELSILCD AEVAVIVFSG TGRLYEFASS  60
SMERVLAKYN KVPTTAESPA KVEIIAAEHD LQPQVLKHDL QPEVNALRAE LANMHKLHCR  120
MMGKDLEGLN FKELQHLEHQ LTEGILTVKD TKEQVLFEQL EKSRLQEEKI KLENQVLREQ  180
IEELRGSSRP YLPEKKNFLA SLSAMCDCRS KREGNSDKSN VP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.13e-50MIKC_MADS family protein