PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019166138.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 218aa    MW: 24773.7 Da    PI: 9.1917
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019166138.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.86.1e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien   rqvtfskRr+g+lKKA+ELS+LCdaevavi+fs tg+lye++s
  XP_019166138.1  9 KKIENINSRQVTFSKRRAGLLKKAKELSILCDAEVAVIVFSGTGRLYEFAS 59
                    68***********************************************86 PP
2K-box68.52.1e-239517916100
           K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      lq e++ L++e+ n+ + + +++G+dLe L++keLq+Le+qL +++ +++++K+++l+eq+e+++ +e++++ en+ Lr+++ee
  XP_019166138.1  95 DLQPEVNALRAELANMHKLHCRMMGKDLEGLNFKELQHLEHQLTEGILTVKDTKEQVLFEQLEKSRLQEEKIKLENQVLREQIEE 179
                     6899******************************************************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MGRGKIEIKK IENINSRQVT FSKRRAGLLK KAKELSILCD AEVAVIVFSG TGRLYEFASS  60
SMERVLAKYN KVPTTAESPA KVEIIAAEPQ VLKHDLQPEV NALRAELANM HKLHCRMMGK  120
DLEGLNFKEL QHLEHQLTEG ILTVKDTKEQ VLFEQLEKSR LQEEKIKLEN QVLREQIEEL  180
RGSSRPYLPE KKNFLASLSA MCDCRSKREG NSDKSNVP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.14e-50MIKC_MADS family protein