PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019166161.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 26858.5 Da    PI: 9.5462
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019166161.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF931.5e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvt+skRrng++KKA+EL vLCda+v+++++s++gkl+ey+s
  XP_019166161.1  9 KRIENQTNRQVTYSKRRNGLFKKAHELTVLCDAKVSIVMISTSGKLHEYIS 59
                    79***********************************************86 PP
2K-box91.12e-3071167197
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yqk+ g++l++++ e++q++l+kL++ ++ L+re+R+++Ge+L++Ls+++L +L +++++s+k iR++K++++ +qie+ +kk ++++e++++L 
  XP_019166161.1  71 YQKTVGVDLWSSHFEKMQEQLKKLRDVNRALRREIRQRMGESLNDLSFEQLTELIEDVDNSIKLIRERKYKVIGNQIETHKKKVRNVEEIHRNLL 165
                     899999***************************************************************************************97 PP

           K-box  96 kk 97 
                      +
  XP_019166161.1 166 LE 167
                     66 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD AKVSIVMIST SGKLHEYISP  60
STTTKQLFDQ YQKTVGVDLW SSHFEKMQEQ LKKLRDVNRA LRREIRQRMG ESLNDLSFEQ  120
LTELIEDVDN SIKLIRERKY KVIGNQIETH KKKVRNVEEI HRNLLLECEA RQEDPYGLVD  180
HEGDYNSVLG FANGGHRILA LRLQPDHHHH HHHGHLHSGG GSDLTTFTLL E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-89MIKC_MADS family protein