PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019166326.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 351aa MW: 40186.6 Da PI: 4.8109

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019166326.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.4	1.6e-10	21	87	21	90
HH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 21 kfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 +f+e+ + +++++ l+++ ++W +++ +k +g++++++GW++ vk+n + +gD ++F ++++ + f XP_019166326.1 21 SFMESVRRD--SKMKVLLRNQVMKVWMIEI--SKIGGAMFFENGWEKVVKDNCVTDGDQLLFIYKEDcDVF 87 678777655..6789*************..*****************************99875655 PP
2	B3	34.6	3.3e-11	249	319	10	83
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 + ++g l++pk+ ++++++k + t+tl+d +gr+W+ ++++ + r++l++GW+ ++ n + e D ++ + XP_019166326.1 249 TKRRGDLYVPKEVVRDYNLK--LPPTVTLRDIKGREWTSIVKVWADG-RTWLSGGWRPLCRRNLIGEEDQCICE 319 567899*********888..7779***********999986.779****************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MLEKDDSRKR STFGSLKEIP SFMESVRRDS KMKVLLRNQV MKVWMIEISK IGGAMFFENG 60 WEKVVKDNCV TDGDQLLFIY KEDCDVFDFI VIDSFGCEKI GVEGEHAQVV ECIRKGSGGE 120 SRDVFVLKAD IYSRVKKNIK KEVDMDMDID IGISVKKNVK KEKDAVMDAN AREEENDDGH 180 HRAIVSQDMD ATEEDDDDDD DDGHTLPQEK KIGSSGSKRG IPEHYGADLF LSGRYIQPDN 240 AYFVTRIRTK RRGDLYVPKE VVRDYNLKLP PTVTLRDIKG REWTSIVKVW ADGRTWLSGG 300 WRPLCRRNLI GEEDQCICEF LPPQLGNQDN MVLQITVVKE DATLVRNDED M

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MLEKDDSRKR STFGSLKEIP SFMESVRRDS KMKVLLRNQV MKVWMIEISK IGGAMFFENG  60
WEKVVKDNCV TDGDQLLFIY KEDCDVFDFI VIDSFGCEKI GVEGEHAQVV ECIRKGSGGE  120
SRDVFVLKAD IYSRVKKNIK KEVDMDMDID IGISVKKNVK KEKDAVMDAN AREEENDDGH  180
HRAIVSQDMD ATEEDDDDDD DDGHTLPQEK KIGSSGSKRG IPEHYGADLF LSGRYIQPDN  240
AYFVTRIRTK RRGDLYVPKE VVRDYNLKLP PTVTLRDIKG REWTSIVKVW ADGRTWLSGG  300
WRPLCRRNLI GEEDQCICEF LPPQLGNQDN MVLQITVVKE DATLVRNDED M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	6e-11	B3 family protein