PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019166354.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 518aa MW: 58112.5 Da PI: 9.5418

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019166354.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0016	456	478	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+++F++ L H r+H XP_019166354.1 456 HECPFCHRVFKSGQALGGHKRSH 478 78******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence
MDDQDLKFMC KLCKKKYPCG KSLGGHMRSH VNVIPTSSSS ELDEMKKMAS LKMQARFELG 60 GNSGYGLREN PRKTWRATGS NLSVPQEKVC KQCGKVFQSI KALCGHMACH SEKEKGGGLK 120 DEHSWTSESK KVMVMDSNSD TEAEDLRNKS SSARPKRYKK IVHTCSFTLP NHVVNTGSEM 180 FEQDQQEVAK CLMMLSRDSG NWDGVSSFME SSDNNSVVLE TKSSSIDMKT PKMDASNRNE 240 SPKTRKIKGI ADAEVIESEN SDSMYFLGEN KTAESDVSVD GFHRFESRIS VETRRDGSIA 300 EKDHLKVMNR IKGYIKSRSG SKDYDYRDFG VASNAGKHDS RKKSKDSSYD PEYKTGSYKK 360 IRLSFSDTKK KKKYECLNCK KIFSSYQALG GHRPCHKRTL ESRYETGENR LDVDTTYNNN 420 INGGNHRESL GSRKATGEGS ACYLGTKIKA KNAKGHECPF CHRVFKSGQA LGGHKRSHFM 480 DGAEENRHRT QVIKAAIPGL LDLNVVPVET ANDVQFMW

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence

MDDQDLKFMC KLCKKKYPCG KSLGGHMRSH VNVIPTSSSS ELDEMKKMAS LKMQARFELG  60
GNSGYGLREN PRKTWRATGS NLSVPQEKVC KQCGKVFQSI KALCGHMACH SEKEKGGGLK  120
DEHSWTSESK KVMVMDSNSD TEAEDLRNKS SSARPKRYKK IVHTCSFTLP NHVVNTGSEM  180
FEQDQQEVAK CLMMLSRDSG NWDGVSSFME SSDNNSVVLE TKSSSIDMKT PKMDASNRNE  240
SPKTRKIKGI ADAEVIESEN SDSMYFLGEN KTAESDVSVD GFHRFESRIS VETRRDGSIA  300
EKDHLKVMNR IKGYIKSRSG SKDYDYRDFG VASNAGKHDS RKKSKDSSYD PEYKTGSYKK  360
IRLSFSDTKK KKKYECLNCK KIFSSYQALG GHRPCHKRTL ESRYETGENR LDVDTTYNNN  420
INGGNHRESL GSRKATGEGS ACYLGTKIKA KNAKGHECPF CHRVFKSGQA LGGHKRSHFM  480
DGAEENRHRT QVIKAAIPGL LDLNVVPVET ANDVQFMW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	369	381	KKKKKYECLNCKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	8e-71	C2H2 family protein