PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019166378.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 304aa MW: 34221.4 Da PI: 11.6027

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019166378.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.3	6.7e-33	165	222	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+ XP_019166378.1 165 EDGYRWRKYGQKAVKNSPFPRSYYRCTNTKCTVKKRVERSSEDPTIVITTYEGQHCHH 222 8******************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence
MISPPILAGH WEAGGILSAF TSSAAEALRR TRATYSATSA GVSRRRRSMA EAEAAAASVV 60 GSTPIWREIV VMTGFPSWRV LPPRLPRRVM LRNRLRFRRS RRVPAPPMMR RRSLPHPVAP 120 PRGSLLIQRE CVFSHQLSKV KKKAQKRIRQ PRFAFMTKSE VDHLEDGYRW RKYGQKAVKN 180 SPFPRSYYRC TNTKCTVKKR VERSSEDPTI VITTYEGQHC HHTVGFPRGG FLGEAAYMSH 240 SYPLTSQFYL PALQFPQEGS LGIPQTHQSQ QGNNRDPNAA MAAPQLPPDE GLLGDIVPPG 300 IRNK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	103	RLRFRRSRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69310.2	2e-65	WRKY family protein