PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019166422.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 370aa MW: 41433.8 Da PI: 6.6027

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019166422.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	72.7	5.2e-23	260	304	1	45
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 k+r++W+peLH+rFv+a++qLGG+++AtPk+i+elm+v+gLt+++ XP_019166422.1 260 KQRRCWSPELHKRFVNALQQLGGAQVATPKQIRELMQVDGLTNDE 304 79****************************************986 PP
2	Myb_DNA-binding	29.3	1.9e-09	262	301	1	36
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS- CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRt 36 r W++e+++++v+a +qlGg t+k I + m+ g+t XP_019166422.1 262 RRCWSPELHKRFVNALQQLGGAqvaTPKQIRELMQvDGLT 301 568***************99***********98888 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MKMSSIPSEL SLDCRPVFVP RTITEFLAEI SLIGSLSDRV LKIDDYVARL EDEMRKIDAF 60 KRELPLCMLL VNDAIVALKE ESVQCRKSKV EPVLEEFIPL KKSCDGGGDR VEIRKDKDSR 120 EKMNWMSSAQ LWHGENHSPS SEFTNKKPRT EANLRMTTEE AENSSITNDL LVSCKTRNIG 180 KAFMPFKRYS GFPSAVVMKE DKELPGIPGL SLGTPGFKNP REDMVIGCLN TKACVSSASS 240 SSVHSIQTGA QPQQQQTSRK QRRCWSPELH KRFVNALQQL GGAQVATPKQ IRELMQVDGL 300 TNDEKYRLHT RRLPGSQATS ANQSVVLGNL FMPHDQSHES SKQSSSQSGS PQDPLHHQDD 360 SMEEEEEGDE

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MKMSSIPSEL SLDCRPVFVP RTITEFLAEI SLIGSLSDRV LKIDDYVARL EDEMRKIDAF  60
KRELPLCMLL VNDAIVALKE ESVQCRKSKV EPVLEEFIPL KKSCDGGGDR VEIRKDKDSR  120
EKMNWMSSAQ LWHGENHSPS SEFTNKKPRT EANLRMTTEE AENSSITNDL LVSCKTRNIG  180
KAFMPFKRYS GFPSAVVMKE DKELPGIPGL SLGTPGFKNP REDMVIGCLN TKACVSSASS  240
SSVHSIQTGA QPQQQQTSRK QRRCWSPELH KRFVNALQQL GGAQVATPKQ IRELMQVDGL  300
TNDEKYRLHT RRLPGSQATS ANQSVVLGNL FMPHDQSHES SKQSSSQSGS PQDPLHHQDD  360
SMEEEEEGDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	1e-49	G2-like family protein