PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019166431.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 267aa    MW: 30504.4 Da    PI: 8.3573
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019166431.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1613.5e-1947140290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +Y++YA+ +GF+v+ks+  k+ r g i k+++vC++e +++ + ++      t++++r+r+++r+gC ak++ +++++  ++v+k+e+ H H l+
  XP_019166431.1  47 YYKTYASITGFDVCKSSDIKN-RYGIILKKKLVCNRERYKDAKPNTtteqktTTQTKRRRPSNRVGCMAKIVFRRDSTRSYVVKKFEEGHAHCLC 140
                     8****************9998.7888*************9999888889998999999**********************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MEEGGKSQHC VMDESQNGSS IWFTKCDPSI KPAVEQVFAT LEDGIAYYKT YASITGFDVC  60
KSSDIKNRYG IILKKKLVCN RERYKDAKPN TTTEQKTTTQ TKRRRPSNRV GCMAKIVFRR  120
DSTRSYVVKK FEEGHAHCLC EESYKPFLKG NRKLDIGHQQ FIANCSKVNI GASKSHDLYA  180
EMVGGVENVG ATQQDFKNYR REILAYMQGG DAQMLISKYL DLKSDYDDMY FEYEANENDQ  240
LARVFWADGM ARKQYSVFGD VVSFDAT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-19FAR1 family protein