PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019166456.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 205aa    MW: 22296.2 Da    PI: 7.3749
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019166456.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260972e-302103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C++lr++C+++C+l++ +     p++q++++ +v+k+FG++ ++++l+++p ++r+++++sl++eA+ r+ +Pv+Gavg++++++++l+q+
  XP_019166456.1   2 SCNGCRILRKGCNENCILRESLqgiitPQAQANATLFVAKFFGRAGLMSFLSSVPASQRPALFQSLLFEACGRTVNPVHGAVGLLWTGNWHLCQT 96 
                     6********************************************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  XP_019166456.1  97 AVETVLR 103
                     *998875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MSCNGCRILR KGCNENCILR ESLQGIITPQ AQANATLFVA KFFGRAGLMS FLSSVPASQR  60
PALFQSLLFE ACGRTVNPVH GAVGLLWTGN WHLCQTAVET VLRGGVLHAP PSDESAASEE  120
EETDDTKLFH PQEASVRAVI DDLDLGLRTG MPPARMSSEG KVNRQTARRS RRSGTPSGES  180
EITTSESSYA YQQQGNDVKL LRLFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.17e-60LBD family protein