PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019166508.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARF

Protein Properties

Length: 662aa MW: 73159.7 Da PI: 7.5134

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019166508.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	77.9	1.1e-24	114	215	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t+t +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + + XP_019166508.1 114 FAKTLTQSDANNGGGFSVPRYCAETIfppldysADPPVQ--TVTAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RAN 204 89**************************996555555..8********************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+v+++r+ XP_019166508.1 205 NGELFVGIRRA 215 9999***97 PP
2	Auxin_resp	109.2	4.5e-36	280	363	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a ++++FevvY+Prast+eF+v++++v++a+++++++ mRfkmafetedss++++ +Gtv++v+ dp+rWpnS+Wr+L+ XP_019166508.1 280 AARLAGSGKPFEVVYYPRASTPEFCVRASSVHSAMRIQWCARMRFKMAFETEDSSRISWfMGTVSSVRVNDPIRWPNSPWRLLQ 363 67788899**************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 662 aa Download sequence
MKELGDDKCL DPQLWHACAG GMVQMPPVNS KVYYFPQGHG EHTLTNVDFS NLTKISPMIL 60 CRVGTVKYLA DPESDEVYAK LKLVPIGREH GFDDDVVLGS NTTAPDTAEK SNSFAKTLTQ 120 SDANNGGGFS VPRYCAETIF PPLDYSADPP VQTVTAKDVH GETWKFRHIY RGTPRRHLLT 180 TGWSTFVNQK KLVAGDSIVF LRANNGELFV GIRRAKKGGI GGSDAPQGWS SAAGNYGAYP 240 SFLREDDNKT IRSTSTPKLS SSGGRFRERG RVKPESVLEA ARLAGSGKPF EVVYYPRAST 300 PEFCVRASSV HSAMRIQWCA RMRFKMAFET EDSSRISWFM GTVSSVRVND PIRWPNSPWR 360 LLQVTWDEPD LLQNVKNVSP WMVELVSNMP IIHMSPFSPP RKKLCLPQDF SLDSQFQIPS 420 FSGNALGASS PFYCLTDVAA GLQGARHPQS GQPSLDLHLN NKLNMGLSPP SLRQFNTDCR 480 IPDAITRGQN DNSENISCLL TMGNSTQKSD TTDELMTPRF LLFGHPILTE QQMSQNCPTG 540 PVSQIREVQS SPGGKEVNSA ELGIDTGHCK VFMESEDISQ TLDLSVVDSY EELYKKLAHM 600 FGIESSEVMK RVLYHDAAGA VKQIGDDPFS EFVKKAKRLT ILRKSGSSSE RDESGSRSCI 660 II

Sequence ? help Back to Top

Protein Sequence Length: 662 aa Download sequence

MKELGDDKCL DPQLWHACAG GMVQMPPVNS KVYYFPQGHG EHTLTNVDFS NLTKISPMIL  60
CRVGTVKYLA DPESDEVYAK LKLVPIGREH GFDDDVVLGS NTTAPDTAEK SNSFAKTLTQ  120
SDANNGGGFS VPRYCAETIF PPLDYSADPP VQTVTAKDVH GETWKFRHIY RGTPRRHLLT  180
TGWSTFVNQK KLVAGDSIVF LRANNGELFV GIRRAKKGGI GGSDAPQGWS SAAGNYGAYP  240
SFLREDDNKT IRSTSTPKLS SSGGRFRERG RVKPESVLEA ARLAGSGKPF EVVYYPRAST  300
PEFCVRASSV HSAMRIQWCA RMRFKMAFET EDSSRISWFM GTVSSVRVND PIRWPNSPWR  360
LLQVTWDEPD LLQNVKNVSP WMVELVSNMP IIHMSPFSPP RKKLCLPQDF SLDSQFQIPS  420
FSGNALGASS PFYCLTDVAA GLQGARHPQS GQPSLDLHLN NKLNMGLSPP SLRQFNTDCR  480
IPDAITRGQN DNSENISCLL TMGNSTQKSD TTDELMTPRF LLFGHPILTE QQMSQNCPTG  540
PVSQIREVQS SPGGKEVNSA ELGIDTGHCK VFMESEDISQ TLDLSVVDSY EELYKKLAHM  600
FGIESSEVMK RVLYHDAAGA VKQIGDDPFS EFVKKAKRLT ILRKSGSSSE RDESGSRSCI  660
II

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein