PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019166801.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 748aa MW: 85744.8 Da PI: 7.946

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019166801.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.4	6.3e-20	44	130	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Yn YA +vGFsvr+ k+++s+ +++++++ f Csk g+++++ k ++ rtgC a ++ ++++g w v+k e+ HnHel+p XP_019166801.1 44 DMYNYYAFRVGFSVRRGKQRYSSATKTMKTKMFHCSKDGFKRSTGKG----CYSKIDGRTGCGAFVQFDLHENGMWIVSKHEKLHNHELVP 130 58**************************************99887....88999*******************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence
MSGTDVAETE HTTDPVGVVD TEDANPADQD LVGMSVCSVD EAYDMYNYYA FRVGFSVRRG 60 KQRYSSATKT MKTKMFHCSK DGFKRSTGKG CYSKIDGRTG CGAFVQFDLH ENGMWIVSKH 120 EKLHNHELVP PSKSYLLRSY RMVSRNHISY LTDLKSSGVS VADGVRFLKT QSGGSPLVGF 180 TSRDAYNSLC TDALNRLDGT DSNKLIEIFK RRQSSERDFY FDFEVDLESR LCSFFLRDGR 240 MRRDYDLFGD LLVHDTTYRT NKYDMICGPF VGMNNHCMNV MFGCGFLMNE KIESFVWLFK 300 TFLRSMDYKS PQSIMTYQCA AMAAAIVQVF PSSRHRLCIW HIGENSKKHI KGLRNKKDFL 360 DIFNCLLKYT DTEAEFEFYW TRMVTTYKCH NNHWIEKLYG CREKWCPAFN KDYFSDGILS 420 SQRSETTNHS ISRRLSKTSG LCDFYNSFVG VISEWRSREN GEDVRCSQGV PTMVMDNVKI 480 LLHAREIYTI EIYYLFEEQF LKGGSCYQEC VMLEDGVYKY HVWRPDVDII RHEVVFNSRQ 540 MDIGCICKLF TELGILCCHC LRILNVHCVS EVLEKYILKR WTKKVVEVDN VDIMSRVDSG 600 NGASSVWLLE IIRKFQRLAV YSQENIEGRK ICEELIADAK RRLEAECGGS LFEDCDIGST 660 SGVIKDPSTR QMKGLRNWRV SSVISKKYNK ARGRKHLANM VASKIKSAIQ SQVEGDILNI 720 AGDGYLVHPS SGGSSFCHVS TMSSMDDN

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence

MSGTDVAETE HTTDPVGVVD TEDANPADQD LVGMSVCSVD EAYDMYNYYA FRVGFSVRRG  60
KQRYSSATKT MKTKMFHCSK DGFKRSTGKG CYSKIDGRTG CGAFVQFDLH ENGMWIVSKH  120
EKLHNHELVP PSKSYLLRSY RMVSRNHISY LTDLKSSGVS VADGVRFLKT QSGGSPLVGF  180
TSRDAYNSLC TDALNRLDGT DSNKLIEIFK RRQSSERDFY FDFEVDLESR LCSFFLRDGR  240
MRRDYDLFGD LLVHDTTYRT NKYDMICGPF VGMNNHCMNV MFGCGFLMNE KIESFVWLFK  300
TFLRSMDYKS PQSIMTYQCA AMAAAIVQVF PSSRHRLCIW HIGENSKKHI KGLRNKKDFL  360
DIFNCLLKYT DTEAEFEFYW TRMVTTYKCH NNHWIEKLYG CREKWCPAFN KDYFSDGILS  420
SQRSETTNHS ISRRLSKTSG LCDFYNSFVG VISEWRSREN GEDVRCSQGV PTMVMDNVKI  480
LLHAREIYTI EIYYLFEEQF LKGGSCYQEC VMLEDGVYKY HVWRPDVDII RHEVVFNSRQ  540
MDIGCICKLF TELGILCCHC LRILNVHCVS EVLEKYILKR WTKKVVEVDN VDIMSRVDSG  600
NGASSVWLLE IIRKFQRLAV YSQENIEGRK ICEELIADAK RRLEAECGGS LFEDCDIGST  660
SGVIKDPSTR QMKGLRNWRV SSVISKKYNK ARGRKHLANM VASKIKSAIQ SQVEGDILNI  720
AGDGYLVHPS SGGSSFCHVS TMSSMDDN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-79	FAR1 family protein