PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019166843.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 232aa    MW: 26763.4 Da    PI: 8.0543
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019166843.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.12.4e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr g+lKKA+E+SvLCda+v vi+fs++gkl+ y+s
  XP_019166843.1  9 KRIENKINRQVTFSKRRSGLLKKANEISVLCDADVGVIVFSTKGKLFQYAS 59
                    79***********************************************86 PP
2K-box92.76.1e-3183164990
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                     ++++ + +++ e+akLk++ie L++++Rh++GedL+sLs++eLq+Le+q+++s+k+iRskKn+l+le+i+elqkk ke ++e
  XP_019166843.1  83 TDQESQCNWSLEYAKLKARIEFLEKSKRHYMGEDLDSLSFRELQNLEHQIDSSIKHIRSKKNQLMLESISELQKKIKEREKE 164
                     55666789*******************************************************************9988776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MGRGKVQLKR IENKINRQVT FSKRRSGLLK KANEISVLCD ADVGVIVFST KGKLFQYASD  60
SRMERILARY ERCSYVESLP NPTDQESQCN WSLEYAKLKA RIEFLEKSKR HYMGEDLDSL  120
SFRELQNLEH QIDSSIKHIR SKKNQLMLES ISELQKKIKE REKEMAEQPN LEQQEKQDTN  180
SSSSYVALQP VNSFNLGETY EIAGEGREIE DAQLPPPNIV MPQWLLPHLT GG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.13e-83MIKC_MADS family protein