PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019166876.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 693aa MW: 77508.5 Da PI: 8.9348

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019166876.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.6	1.8e-22	70	168	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY+ Y++ GF+vr s+ k+ r+g +++r +vCs++g + +k ++k+rr+r+++r+gC+akl +kk+++g+++v+k++++H XP_019166876.1 70 EFYKIYGRASGFDVRHSSVKRD-RSGDVIRRSLVCSRQGAKGGGGRKptldvrgtssSNKQRRRRVSNRVGCNAKLGLKKKSTGEFVVSKFVEDH 163 6**************99998.7788**********99999999***9999******************************* PP FAR1 86 nHela 90 nH+l+ XP_019166876.1 164 NHSLC 168 **8 PP

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence
MDAHGDGHPT AGAVEHGVTG SIDGDFGTRD ATHYTPGKTN TLNQHWKPNV DTTIIPVHGQ 60 CFKSVYEGVE FYKIYGRASG FDVRHSSVKR DRSGDVIRRS LVCSRQGAKG GGGRKPTLDV 120 RGTSSSNKQR RRRVSNRVGC NAKLGLKKKS TGEFVVSKFV EDHNHSLCSE GAKLFMRGNR 180 KLNVAQQAFL ADCLKVNVGP STGYRLCREV AGSFENVGAT YVEFHNFKRD LYNLVFVPFT 240 GVDNHKRCIT FAVGLLSKED VESYSWLLER FNLAMGKAPL CAVTDQDPAM KIAMEQVLPG 300 CRHRFCMWHI MTKVSEKVGP ELSNNEEFRK SLNDIVWNKT ASTGDYEVQW QLLMEKYNLS 360 DHRWFQKLYA ERNHWIPAFF LDLPMSGLVR TTSRSEAQNS VYGKFTCLHS SLVEFYMQTE 420 SVLDTQRHNQ AKLDAQCEGS LPEFKTPLAL ERHAADLFRL TIFYALQKEI EAACFYCEVV 480 GIREDGGTIY YNIGGDCTTT HTVQYKPSGC IAFCSCKMFQ RLGLICRHMF LVFKSAHIEQ 540 LPSQYVVERW RKHLGCGACR GWRSDGDPPK SGASELWSEI QTCVGMVGES MVRQARMVEV 600 LKELRDEFAS DGTIICEAKG NRAAIEALCG VKPPPCITIK PPAQAKNKGS GKRIKSTREI 660 AIENSGKAGR KCGVCGEYAR HNARSCPSKQ RAV

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence

MDAHGDGHPT AGAVEHGVTG SIDGDFGTRD ATHYTPGKTN TLNQHWKPNV DTTIIPVHGQ  60
CFKSVYEGVE FYKIYGRASG FDVRHSSVKR DRSGDVIRRS LVCSRQGAKG GGGRKPTLDV  120
RGTSSSNKQR RRRVSNRVGC NAKLGLKKKS TGEFVVSKFV EDHNHSLCSE GAKLFMRGNR  180
KLNVAQQAFL ADCLKVNVGP STGYRLCREV AGSFENVGAT YVEFHNFKRD LYNLVFVPFT  240
GVDNHKRCIT FAVGLLSKED VESYSWLLER FNLAMGKAPL CAVTDQDPAM KIAMEQVLPG  300
CRHRFCMWHI MTKVSEKVGP ELSNNEEFRK SLNDIVWNKT ASTGDYEVQW QLLMEKYNLS  360
DHRWFQKLYA ERNHWIPAFF LDLPMSGLVR TTSRSEAQNS VYGKFTCLHS SLVEFYMQTE  420
SVLDTQRHNQ AKLDAQCEGS LPEFKTPLAL ERHAADLFRL TIFYALQKEI EAACFYCEVV  480
GIREDGGTIY YNIGGDCTTT HTVQYKPSGC IAFCSCKMFQ RLGLICRHMF LVFKSAHIEQ  540
LPSQYVVERW RKHLGCGACR GWRSDGDPPK SGASELWSEI QTCVGMVGES MVRQARMVEV  600
LKELRDEFAS DGTIICEAKG NRAAIEALCG VKPPPCITIK PPAQAKNKGS GKRIKSTREI  660
AIENSGKAGR KCGVCGEYAR HNARSCPSKQ RAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-56	FAR1 family protein