PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019166895.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 731aa MW: 82844.8 Da PI: 8.6697

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019166895.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.9	5.8e-17	44	141	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 fY +YA+++GFsvr + k+ r+g+ t+r + Cs+eg + ++ + ++rr+r+++r++C+a++ ++k+k + v+ ++ eH+ XP_019166895.1 44 FYMTYARTCGFSVRHGTLKRG-RDGQLTSRYLLCSREGVKGGGRNPpkpvvggsggSITQRRKRVSNRVNCNARICITKDKGVGFIVSIFVPEHT 137 9**************9998.8888*********9998877999**99999******************************* PP FAR1 87 Hela 90 H ++ XP_019166895.1 138 HRMC 141 98 PP

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence
MGPESAGTGG YTSIPVKYWW PAVDSAITPA IGYRFKTLAE GVYFYMTYAR TCGFSVRHGT 60 LKRGRDGQLT SRYLLCSREG VKGGGRNPPK PVVGGSGGSI TQRRKRVSNR VNCNARICIT 120 KDKGVGFIVS IFVPEHTHRM CSEPSKLFMR INRKLDVAQQ AFLTNCIKAN VGGSKGFRLY 180 RESVGSYANV GATDTEFHNF KRDLQSYVHD KDGEMIIAKF KQRRDICENF FFDHYLDEEN 240 HLARLFWADH TGRQSFMSFG DVISFDATYG TNRYSLVFVP FTGVDHHKRC ITFACGLLTR 300 EDTESYVWVL ERFETAMGKS PLCVVTDQDP AMKSAIAQVL PECRHRYCMW HIMTKVSEKS 360 GVELSKDQTF RTQLNNVVWN ETIGISDFET QWQSLMEKYN LTGHRWFTKL YTERAFWIPS 420 YFLDLPMSGV LRTTSHSESE NSAYGKSTRP HCSLVEFYVQ YESVLETQRH RQSKLNAESE 480 GSLPEFKTPL ALERHTVQVF TLTVFYELQL EIEAACFYCK VVGIRADGEC IRYDIKGEYN 540 VVHTVEYMPS LSIASCSCKL FERLGLVCRH MFLVFKDAEM ARLPARYIAA RWCKQDGLAN 600 WCAQCSDCPP LESVPNRLWT EIHRCTAMVG SNTVRQTRML QVIEELRDEF LSDGMGVNPP 660 KGNGVAIAAL CGVEPPTSIT IKPPAQAKNK GTGKRIKSQR ELAIERSGKA CRKCGVCGEY 720 AHHNARSCPL K

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence

MGPESAGTGG YTSIPVKYWW PAVDSAITPA IGYRFKTLAE GVYFYMTYAR TCGFSVRHGT  60
LKRGRDGQLT SRYLLCSREG VKGGGRNPPK PVVGGSGGSI TQRRKRVSNR VNCNARICIT  120
KDKGVGFIVS IFVPEHTHRM CSEPSKLFMR INRKLDVAQQ AFLTNCIKAN VGGSKGFRLY  180
RESVGSYANV GATDTEFHNF KRDLQSYVHD KDGEMIIAKF KQRRDICENF FFDHYLDEEN  240
HLARLFWADH TGRQSFMSFG DVISFDATYG TNRYSLVFVP FTGVDHHKRC ITFACGLLTR  300
EDTESYVWVL ERFETAMGKS PLCVVTDQDP AMKSAIAQVL PECRHRYCMW HIMTKVSEKS  360
GVELSKDQTF RTQLNNVVWN ETIGISDFET QWQSLMEKYN LTGHRWFTKL YTERAFWIPS  420
YFLDLPMSGV LRTTSHSESE NSAYGKSTRP HCSLVEFYVQ YESVLETQRH RQSKLNAESE  480
GSLPEFKTPL ALERHTVQVF TLTVFYELQL EIEAACFYCK VVGIRADGEC IRYDIKGEYN  540
VVHTVEYMPS LSIASCSCKL FERLGLVCRH MFLVFKDAEM ARLPARYIAA RWCKQDGLAN  600
WCAQCSDCPP LESVPNRLWT EIHRCTAMVG SNTVRQTRML QVIEELRDEF LSDGMGVNPP  660
KGNGVAIAAL CGVEPPTSIT IKPPAQAKNK GTGKRIKSQR ELAIERSGKA CRKCGVCGEY  720
AHHNARSCPL K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-87	FAR1 family protein