PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019166930.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 233aa    MW: 25802.1 Da    PI: 6.6207
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019166930.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.71.3e-2064150290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      Yn+YA+++GFsvrk +++ +  ++++ ++ f+Csk g++ + +     +  ++   rtgC a+++    +dg w vtk ++ HnHel+
  XP_019166930.1  64 LYNNYAYRAGFSVRKGNQRCKVYSKTVQMKMFMCSKAGFKVKANAG--VRAYSKIDIRTGCGACVQFDVGEDGLWTVTKHVKVHNHELC 150
                     7***************************************998877..7888999*********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MDEAVDQRDE AVDELHTVPV SEDVVVDLSC SDPIELDIDG SSSIPVDEDL VDVVVSNGVE  60
AYELYNNYAY RAGFSVRKGN QRCKVYSKTV QMKMFMCSKA GFKVKANAGV RAYSKIDIRT  120
GCGACVQFDV GEDGLWTVTK HVKVHNHELC AVDKSHLLRS HRNVGDNQLL YLKDLKKSGV  180
AMAYGIRFLK HQAGGSPLIG FTNRDAYNSI ASDTSKRLDG TDSNSLIEIF RKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-18FAR1 family protein