PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019166937.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 552aa MW: 63801.4 Da PI: 8.4861

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019166937.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.6	1.1e-14	35	129	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY +YA + +++r +++ + r g + + Cs+eg++ ++ ++ t+ ++r+r +tr+gC+a++ +++k+g + ++ lel H+H l XP_019166937.1 35 DFYGAYAAIARYDIRHGTKRWN-RAGAVHIKYILCSREGYKPKKMSSsnkgttTSPKKRRRLSTRVGCNARIGFTRHKSGSYTIHALELWHTHYL 128 6**************99888.67779999999**9998888899999999999*********************************9 PP FAR1 90 a 90 + XP_019166937.1 129 C 129 8 PP

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence
MVVLPDGTKQ WLPNCKSENT PYIGQEFASL ENGVDFYGAY AAIARYDIRH GTKRWNRAGA 60 VHIKYILCSR EGYKPKKMSS SNKGTTTSPK KRRRLSTRVG CNARIGFTRH KSGSYTIHAL 120 ELWHTHYLCS DIGRPFLKIN RKLDIGHKIF VANCARANIG STKSWRLYKE MVGSFSDIGA 180 TSTDFCNFRR DLLAYIAGAD AQMVVEDIYK NKEMEPDFYF DFDLNEDMEL CKLFWADTIS 240 RKNYACFGDV MSFDATYSTN RYKLVFVPFT GVDNHKQSIT FGAGLIARED VESYEWLLKN 300 FKTAMGYTPR CVITDQDPAL KVAIPNIMPE TRHRFCMWHI MEKVGDKVGN ALAKNMEFRK 360 ALNNAVWDET LSVTAFELKW EEVMQGYNLV QHRWFDQMYK ARASWIPAYF QDIFMGGLLK 420 TTSRSESENS YFGKFTNHHN SLVEFIMQYN RATGEQRYHQ KQLNAEGESS FPETKTPLAI 480 ERQATAMYTK NIFYDFQEEI WEGSFTCKIT CKINDDGGYK YTVHETGGNI FEVTHEESTK 540 RTECNCNKFN RV

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence

MVVLPDGTKQ WLPNCKSENT PYIGQEFASL ENGVDFYGAY AAIARYDIRH GTKRWNRAGA  60
VHIKYILCSR EGYKPKKMSS SNKGTTTSPK KRRRLSTRVG CNARIGFTRH KSGSYTIHAL  120
ELWHTHYLCS DIGRPFLKIN RKLDIGHKIF VANCARANIG STKSWRLYKE MVGSFSDIGA  180
TSTDFCNFRR DLLAYIAGAD AQMVVEDIYK NKEMEPDFYF DFDLNEDMEL CKLFWADTIS  240
RKNYACFGDV MSFDATYSTN RYKLVFVPFT GVDNHKQSIT FGAGLIARED VESYEWLLKN  300
FKTAMGYTPR CVITDQDPAL KVAIPNIMPE TRHRFCMWHI MEKVGDKVGN ALAKNMEFRK  360
ALNNAVWDET LSVTAFELKW EEVMQGYNLV QHRWFDQMYK ARASWIPAYF QDIFMGGLLK  420
TTSRSESENS YFGKFTNHHN SLVEFIMQYN RATGEQRYHQ KQLNAEGESS FPETKTPLAI  480
ERQATAMYTK NIFYDFQEEI WEGSFTCKIT CKINDDGGYK YTVHETGGNI FEVTHEESTK  540
RTECNCNKFN RV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	95	PKKRRRL
2	91	95	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-79	FAR1 family protein