PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019167193.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 294aa    MW: 33498.1 Da    PI: 4.8711
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019167193.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox566.8e-1878131356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++ ++q++ Le+ Fe ++++  e++ +LA+klgL  rqV +WFqNrRa+ +
  XP_019167193.1  78 KKRRLLPDQVQFLEKSFEVENKLEPERKLHLAQKLGLHPRQVAIWFQNRRARNR 131
                     4557889*********************************************98 PP
2HD-ZIP_I/II122.32.3e-3977168192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl  +qv++LE+sFe e+kLeperK +la++Lgl+prqva+WFqnrRAR +tkq+Ek++++Lk++yd+l+++ ++++ke+++Lr++++
  XP_019167193.1  77 EKKRRLLPDQVQFLEKSFEVENKLEPERKLHLAQKLGLHPRQVAIWFQNRRARNRTKQIEKEFDSLKASYDKLTSDFDAISKENQNLRHQVQ 168
                     69**************************************************************************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MEVGDLRTSI LQTDKFPPSS DVLDSLWIPD SKPSFHGPAA SMVNFDGLQE ARGLEKEESR  60
SNNEDDYQGG YLGHQPEKKR RLLPDQVQFL EKSFEVENKL EPERKLHLAQ KLGLHPRQVA  120
IWFQNRRARN RTKQIEKEFD SLKASYDKLT SDFDAISKEN QNLRHQVQLL TEKLKSKERE  180
DDQMNSFEAE PQKQQPIGGT ILADGKALLS ITVCKQEDAI SSAKSDVLDS DSPHCKDLES  240
SDFSQDEDDS LPPNLFHTLS FPKLEDHHYA INSCNLGFSI SDHSPWFWTS GLVD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-44HD-ZIP family protein