PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019167339.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 252aa MW: 29056.6 Da PI: 9.8995

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019167339.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.6	1.4e-18	5	50	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++vk++G+++W++Ia++++ gR++k+c++rw++ XP_019167339.1 5 RGHWRPHEDEKLRELVKKYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQ 50 899***************************.*********996 PP
2	Myb_DNA-binding	54.4	2.9e-17	57	100	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l+ ++ +G++ W+ Iar ++ gRt++ +k++w+ XP_019167339.1 57 RSPFTEEEEERLLASHRIHGNR-WAIIARLFP-GRTDNAVKNHWHV 100 789*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MMCSRGHWRP HEDEKLRELV KKYGPHNWNA IAEKLQGRSG KSCRLRWFNQ LDPRINRSPF 60 TEEEEERLLA SHRIHGNRWA IIARLFPGRT DNAVKNHWHV IMARKCRERS KIYAKKAVLK 120 SLNDHAASSS RQPHPGGEFT RAAFNGNLPF FDKLHYPSLP YAHSLYPLEF QGDNFVQPVT 180 MDLDNRKKSV EFYDFLQVNT DSNKSEVIDQ HARRDDEEVE QQAAAGNRSK PAGGGDVQFI 240 DFFSTGAGRR SA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17950.1	3e-83	MYB family protein