PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019167409.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 744aa    MW: 81075.8 Da    PI: 6.5965
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019167409.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.7e-193590156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++ +++t++q+++Le+ F+++++p++++r +L+++l+L  rq+k+WFqNrR+++k
  XP_019167409.1 35 KKRYHRHTANQIQRLESIFKECPHPDEKTRLQLSRELSLAPRQIKFWFQNRRTQMK 90
                    688999***********************************************998 PP
2START193.51e-602364602206
                     HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     +a  a++el+++ + +e +W+ks    + +n + + + f+++ +       ++ea+r+sgvv+m++  lv  ++d + +W e+++    ka+tle
  XP_019167409.1 236 IAGNAMEELIRLLQGNESVWTKSLdgrDLLNLESYERVFPRASNhmknpnMRIEASRDSGVVIMNALALVDMFMDAN-KWVEMFPtivsKASTLE 329
                     67899*******************996555555555666665558999*****************************.***************** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     vissg      g+lqlm+ elq+lsplvp R f+f+R+++q ++g+w+ivdvS d++q++ +s+s+ ++++lpSg+li++++ng+s+vtwvehv+
  XP_019167409.1 330 VISSGvlgsrsGTLQLMYEELQVLSPLVPtRQFYFLRFCQQIEQGSWAIVDVSYDVPQDNYQSPSSCKVHRLPSGCLIQDMPNGYSNVTWVEHVE 424
                     ************************************************************99********************************* PP

                     --SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 172 lkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     ++++++ h l+r +++sg+a+ga +w+  lqr ce+
  XP_019167409.1 425 VEDKVIlHKLYRDVIQSGIAFGAERWLTVLQRMCER 460
                     **********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 744 aa     Download sequence    
MEFGGGGGGG GAGGSSASGS GSGDHHDPSD RNRNKKRYHR HTANQIQRLE SIFKECPHPD  60
EKTRLQLSRE LSLAPRQIKF WFQNRRTQMK AQHERADNCA LRAENDKIRC ENIAIREALK  120
NVICPSCGGP PLREDSYFDE HKLRMENMAL KEELDKVSSI AAKYIGRPIS QLPPVQPIHL  180
SSLDLSMSSY GGHGIPGGPS LDLDLLPGSS GAAAMPGFPF PALSLSDMDR SLMADIAGNA  240
MEELIRLLQG NESVWTKSLD GRDLLNLESY ERVFPRASNH MKNPNMRIEA SRDSGVVIMN  300
ALALVDMFMD ANKWVEMFPT IVSKASTLEV ISSGVLGSRS GTLQLMYEEL QVLSPLVPTR  360
QFYFLRFCQQ IEQGSWAIVD VSYDVPQDNY QSPSSCKVHR LPSGCLIQDM PNGYSNVTWV  420
EHVEVEDKVI LHKLYRDVIQ SGIAFGAERW LTVLQRMCER FVCLMVSGSS SRDLGGVIPS  480
AEGKRSMMKL AQRMVNNFCG SVNPSNGHHW TTLSGANEFE VRATLQKSTD PGQPNGVVIS  540
AATTIWLPIS PQLVFNFFRD ERTRPQWDVL SNQNPVQEVA HIANGSHPGN CISVLRAYNT  600
SQNNMLILQE SCIDSSGCLV VYSPVDLPAI NMAMSGEDPT YIPLLPSGFT ISPDGRSDRG  660
NSTKINIDQA SSSTSNPASS TSTSAAGGGE GGSLITVVFQ ILVSSLPSAK MSPESVATVN  720
SLIGNTVHQI KSALNCSAVP TSAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein