PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019167441.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 338aa MW: 37009.4 Da PI: 9.7546

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019167441.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.8	6.1e-30	163	222	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ +++++pr+Y+rC++a +Cpvkkkv+rs ed+++++ tYegeHnh+ XP_019167441.1 163 VKDGYQWRKYGQKVTRDNPCPRAYFRCSFApSCPVKKKVQRSVEDQSILVATYEGEHNHD 222 58*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MEFTSLVDTS LGLNAKPIRV VSGRPKQEVE SSFIGLRMNI GNKDEAGELM EELNRVSAEN 60 RKLSEMLTVV CGNYNALREQ VREYMNKQQQ SGSINGDNSQ VIMGSRKRKS TSNNNNNVNS 120 ESSSSDEDSA KKPRRELEQH HIIKANTSKV YVKTEASDTS LIVKDGYQWR KYGQKVTRDN 180 PCPRAYFRCS FAPSCPVKKK VQRSVEDQSI LVATYEGEHN HDLPSKLEQS PTTATAAGRS 240 LPPVINGGSA TAAASLNTQP RDLTPPKTAP SSVANANGAK TASTPTAGSS LLPVDRPDFQ 300 QFFIEQMASS LTKDPTFKAA IAAAISGKFP SHNNREKW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	110	SRKRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80840.1	1e-84	WRKY family protein