PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019167546.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 217aa    MW: 24538 Da    PI: 10.4966
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019167546.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1613.6e-1953138290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     fY eYA ++GF +r+ +s+ks+r+g++++r + C   g ++++k   + +  +r   r +C a++ +k+ek g+w+v k++++HnH+l+
  XP_019167546.1  53 FYVEYAGRAGFITRVLSSRKSERDGSTISRGLGCR--GIPDTQKIG-NAATVKRDRRRKSCAAMILMKREKPGTWVVRKFVKDHNHPLM 138
                     9*********************************7..555555555.5688899999******************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MNAPVMDVQI AVDGSIERAE FSAGGEVSPS ETDRIREPNE GMTFDSEAAA RAFYVEYAGR  60
AGFITRVLSS RKSERDGSTI SRGLGCRGIP DTQKIGNAAT VKRDRRRKSC AAMILMKREK  120
PGTWVVRKFV KDHNHPLMVS LPKRHSTFDE KDKKIQELTA ELRVKKRLSA AYREHLLGIM  180
KDVESHSEHL SSKVQAIRDN LRSLDAKRQE LFTRERP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.12e-50FAR1 family protein