PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019167575.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 205aa    MW: 22828.4 Da    PI: 4.9335
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019167575.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS94.12.2e-296918020134
            GRAS  20 aqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl....fsevsPilkfshltaNqaIleavegee 110
                      + +L ++s+la pdgd+mqR++ yf++ALa r ++   +l k+ +   +     ++++  +++    f+e++P+ k+++l+aNqaI ea+ege+
  XP_019167575.1  69 SNVALDQISHLAVPDGDTMQRITCYFAQALADRGLK---NLTKSATELIQ----AIQKIDGDNYpeikFVELFPFSKVAFLVANQAIIEAMEGEK 156
                     6789*****************************998...33332222222....23333333333336*************************** PP

            GRAS 111 rvHiiDfdisqGlQWpaLlqaLas 134
                     +vHiiD  +  + QW aLlq L++
  XP_019167575.1 157 MVHIIDVHAADPNQWRALLQDLSA 180
                     *********************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MSLIPGRSPR LKSDLCVLDS LGEEPLLLFQ KCRKPATERT MTAIATSFKD TDLDWELRGM  60
LRVAMFPNSN VALDQISHLA VPDGDTMQRI TCYFAQALAD RGLKNLTKSA TELIQAIQKI  120
DGDNYPEIKF VELFPFSKVA FLVANQAIIE AMEGEKMVHI IDVHAADPNQ WRALLQDLSA  180
GVHLVKEVME QMGGVLSEEA KKLDN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.14e-39GRAS family protein