PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019167630.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 162aa    MW: 18409.2 Da    PI: 7.7102
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019167630.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF275.8e-094401349
                    HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    f k +n i K A+ +++LC+a+v  i fs  g++y +
  XP_019167630.1  4 FYKGKNSIVKRANQICTLCAANVVTICFSICGQMYVF 40
                    8899******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    
MANFYKGKNS IVKRANQICT LCAANVVTIC FSICGQMYVF GDETIINAFE EETTIAPQCT  60
LKCTAHKPPR YFKLQNWTNK NNISASSSSA SSFHMEKGQK KCVKSPINPP TNMDEFSDKL  120
IVPQIEQLEE KMEEFKEIMA QQYLFLRTQL NVTESSAMQK ID