PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019167775.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 256aa MW: 28304.8 Da PI: 8.1086

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019167775.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00071	100	122	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_019167775.1 100 YECKTCNRVFPSFQALGGHRASH 122 99**********99999998887 PP
2	zf-C2H2	14	0.00015	174	196	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H XP_019167775.1 174 HECSICGAEFSSGQALGGHMRRH 196 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence
MEGFEVGKRD ESICPMKKRR TKRPRHHDTS SSLSSFSDNS GGFDHRRSLS NDSDIELNHH 60 RVEEEEDMAK CLMLLSQGHI RKPPPSAAAA AAAGMNREVY ECKTCNRVFP SFQALGGHRA 120 SHRKPKAAAA EQQQQNQESV VVDDDVTTLS LQIPGRPPAV TSSPPRNKVS NRIHECSICG 180 AEFSSGQALG GHMRRHRPLP SIAAADQEIK KPSLRLALDL NLPAPEDDHR EITKFPFASK 240 EQVIVFSASP LVDCHY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	16	23	MKKRRTKR
2	17	22	KKRRTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03510.1	2e-47	C2H2 family protein