PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019167777.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 213aa    MW: 24970.3 Da    PI: 8.9685
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019167777.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF961.7e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien+snrqvtfskRrng+lKKA+E+SvLCda+v+viif+s+gk++e+ss
  XP_019167777.1  9 KRIENSSNRQVTFSKRRNGMLKKAKEISVLCDARVSVIIFGSSGKMHEFSS 59
                    79***********************************************96 PP
2K-box77.82.8e-2669165197
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     y+k +gk+l++ak+e+l++e++++kke++n+q e+Rhl+Ged++sL+++eL+ Le++L+++l++i +k++e++++ +++   + + + een++L+
  XP_019167777.1  69 YHKLTGKRLWDAKHENLENEINRIKKENDNMQIELRHLKGEDISSLNYRELMILEDALQNGLRSISEKQMEVWRNLTKRKYDQSQGVAEENEQLS 163
                     78999****************************************************************************************98 PP

           K-box  96 kk 97 
                      +
  XP_019167777.1 164 YR 165
                     65 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MGRGRIEIKR IENSSNRQVT FSKRRNGMLK KAKEISVLCD ARVSVIIFGS SGKMHEFSSS  60
SLVDILDQYH KLTGKRLWDA KHENLENEIN RIKKENDNMQ IELRHLKGED ISSLNYRELM  120
ILEDALQNGL RSISEKQMEV WRNLTKRKYD QSQGVAEENE QLSYRLRQLE IAAMNRNLGE  180
MGEVFNQRES NDYESQMPFT FSVQPMQPNL QDR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-76MIKC_MADS family protein