PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019167778.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 212aa MW: 24842.1 Da PI: 8.4416

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019167778.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96	1.6e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvtfskRrng+lKKA+E+SvLCda+v+viif+s+gk++e+ss XP_019167778.1 9 KRIENSSNRQVTFSKRRNGMLKKAKEISVLCDARVSVIIFGSSGKMHEFSS 59 79***********************************************96 PP
2	K-box	75.3	1.6e-25	69	162	1	95
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 y+k +gk+l++ak+e+l++e++++kke++n+q e+Rhl+Ged++sL+++eL+ Le++L+++l++i +k++e++++ +++ + + + een++L+ XP_019167778.1 69 YHKLTGKRLWDAKHENLENEINRIKKENDNMQIELRHLKGEDISSLNYRELMILEDALQNGLRSISEKQMEVWRNLTKRYDQ-SQGVAEENEQLS 162 78999*******************************************************************9887766544.455555666665 PP

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence
MGRGRIEIKR IENSSNRQVT FSKRRNGMLK KAKEISVLCD ARVSVIIFGS SGKMHEFSSS 60 SLVDILDQYH KLTGKRLWDA KHENLENEIN RIKKENDNMQ IELRHLKGED ISSLNYRELM 120 ILEDALQNGL RSISEKQMEV WRNLTKRYDQ SQGVAEENEQ LSYRLRQLEI AAMNRNLGEM 180 GEVFNQRESN DYESQMPFTF SVQPMQPNLQ DR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	1e-76	MIKC_MADS family protein