PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019167779.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 299aa MW: 33582.3 Da PI: 8.0675

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019167779.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.5	5.3e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEde+l++++++ G+g +W + +++ g++R++k+c++rw++yl XP_019167779.1 14 RGPWSPEEDEKLKEYIEKNGPGgNWIALPQKAGLRRCGKSCRLRWLNYL 62 89****************99***********************97 PP
2	Myb_DNA-binding	36.7	9.9e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ +Ed ++ + + G++ W+ Ia+ ++ gRt++++k++w++ XP_019167779.1 69 GDFSDQEDRIICSLYATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 679****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence
MGRAPCCDKE KVKRGPWSPE EDEKLKEYIE KNGPGGNWIA LPQKAGLRRC GKSCRLRWLN 60 YLRPNIKHGD FSDQEDRIIC SLYATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGI 120 MLSSSSSPDQ KTRPNPLPPS TISSSSPFKC SNNYNYYPIT DPTFPPPYAS TTTFLNPSSS 180 SSASNPVGPT IQSHHLLVKG DHHHHHHHHQ ASCSSSDGSW SNQIISQDKE YGYGESLGLQ 240 SFGYNGVAEN QQAVNNGGNP LDYSSLEEIK QLISTNNVSQ NSFFVDEENK YEEKVMMYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	3e-74	MYB family protein