PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019167946.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 230aa MW: 26850 Da PI: 7.7668

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019167946.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.9	2.1e-17	8	55	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEde+l+ av+ lG ++W++ a+ g++Rt+k+c++rw +yl XP_019167946.1 8 KGPWLEEEDEKLAAAVASLGERRWDALAKASGLRRTGKSCRLRWMNYL 55 79********************************************97 PP
2	Myb_DNA-binding	52.7	1e-16	61	105	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r r TteE++l++++ +++G++ W++Ia+ ++ gRt++++k++w+ + XP_019167946.1 61 RSRITTEEELLIIELQRKWGNK-WAKIAKQLP-GRTDNDIKNYWRGH 105 6799****************.*****.*********966 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MEKETLRKGP WLEEEDEKLA AAVASLGERR WDALAKASGL RRTGKSCRLR WMNYLRSNIK 60 RSRITTEEEL LIIELQRKWG NKWAKIAKQL PGRTDNDIKN YWRGHLRKKI LREQECFKNT 120 SNKAQQMNTS WRSCTTADRA SFKDGSLGSS VDSSEVVELP DYALVSSPYE ERLWDWMSSW 180 SHEDSEMEHH GDGESCSRNQ WCCHPRWTSD YSCIGTIWDY ASSSIWDNTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53200.1	1e-48	MYB family protein