PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019168077.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 165aa    MW: 18120.8 Da    PI: 7.9237
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019168077.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.76.8e-37161171101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lr+kC ++C++apyf ++q   +fa+vhk+FG+sn +k+l  +p ++r++a+ +l+yeA+ar+++PvyG+v++il+l+qq+ +l+ael
  XP_019168077.1  16 PCGACKFLRKKCIPSCIFAPYFDSDQgVTRFAAVHKVFGTSNATKILLCTPANRRHCAAITLCYEAQARLSNPVYGCVSTILALKQQVVSLQAEL 110
                     7*************************77******************************************************************* PP

          DUF260  95 allkeel 101
                     a++k+++
  XP_019168077.1 111 AMVKTQI 117
                     **99885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    
MDTYSETAGA VAIQAPCGAC KFLRKKCIPS CIFAPYFDSD QGVTRFAAVH KVFGTSNATK  60
ILLCTPANRR HCAAITLCYE AQARLSNPVY GCVSTILALK QQVVSLQAEL AMVKTQIMNS  120
RVAVENGVQT SQQQEEPTYF NLIGETTYSD SNCFDPIAFT NHMFR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.18e-58LBD family protein