PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019168677.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 330aa MW: 36946.4 Da PI: 6.6679

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019168677.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.3	1.5e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++ ++ +G g+W+++++ g+ R++k+c++rw +yl XP_019168677.1 13 RGLWSPEEDEKLIQHITSHGHGCWSAVPKLSGLQRCGKSCRLRWINYL 60 788*******************************************97 PP
2	Myb_DNA-binding	52.4	1.2e-16	66	109	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+ ++d+++ lG++ W+ Ia++++ gRt++++k++w++ XP_019168677.1 66 RGSFTEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 89******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MGHHCCSKQK VKRGLWSPEE DEKLIQHITS HGHGCWSAVP KLSGLQRCGK SCRLRWINYL 60 RPDLKRGSFT EQEERTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL 120 DPNTHNLLSI SPNQSKIHHK PKPNNNNSYH HHHQLSPSTF TIDTTKEVIP MGMKAALSSI 180 INPPFHQPDY TNNTMMIPTS NDQLATTFDY QNPTTIMDFG SCSSSMESTT SSLIAAAAGG 240 LGIMAGNDGA VFGTDTTFQP AQGFEPPEPQ EERQEQEQLY KVNSDEFNNG GQNMFDAASN 300 FDFEFMDAAL MPCGVYSNVN PIDQLIAWDC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	1e-81	MYB family protein