PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019168678.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 307aa    MW: 34254.4 Da    PI: 6.1677
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019168678.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-164386146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg++T++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
   XP_019168678.1 43 RGSFTEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 86
                     89********************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MRNSFNTSPP MAMAAGALCL NFQRCGKSCR LRWINYLRPD LKRGSFTEQE ERTIIDVHRI  60
LGNRWAQIAK HLPGRTDNEV KNFWNSCIKK KLIAQGLDPN THNLLSISPN QSKIHHKPKP  120
NNNNSYHHHH QLSPSTFTID TTKEVIPMGM KAALSSIINP PFHQPDYTNN TMMIPTSNDQ  180
LATTFDYQNP TTIMDFGSCS SSMESTTSSL IAAAAGGLGI MAGNDGAVFG TDTTFQPAQG  240
FEPPEPQEER QEQEQLYKVN SDEFNNGGQN MFDAASNFDF EFMDAALMPC GVYSNVNPID  300
QLIAWDC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.13e-52MYB family protein