PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019168716.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 254aa    MW: 27970.6 Da    PI: 7.373
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019168716.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-1266112354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN  +++Lr+l+P++     +K++Ka+ L ++++ +k+L
  XP_019168716.1  66 KSHSEAERRRRERINAHLATLRSLVPSN-----EKMDKAALLAEVIRQVKQL 112
                     58*************************9.....8*************99998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MAYGGTVDQF VGDLGESSGD WGNGEKGVSQ SLVLDSEKCE LVKTCGVVRK KGEDGGLGVK  60
TTAALKSHSE AERRRRERIN AHLATLRSLV PSNEKMDKAA LLAEVIRQVK QLKESARQVS  120
DSLFLPMDSD EIQVEQVSGT AGEDGTRFFQ ASICCDYRPE LLSDLRQCVD SLGSNLVKSE  180
ISILGGRVKC LFFFRDVIHG GNGRSEAWEV LVRSIQQTLR SVLEKDSKPP EYSKIAPYPN  240
KRHRISSFDS AYLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17277ERRRRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-30bHLH family protein