PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019168800.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 353aa MW: 39421.4 Da PI: 6.5132

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019168800.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	71	2.2e-22	41	134	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWt+ e+l+Lie+++ e+r r + ++kp+W+ vs+++++ g++r+p+qC+++w+nl ++kki+++e + ++e+ s + + ++l+ XP_019168800.1 41 RWTRPETLVLIEGKKIAEDRRRG-CgassvldcaQIKPKWDLVSSYCKQNGVNRGPVQCRKRWSNLISDFKKIRTWELQVKEERDSYWMMMNDLR 134 8***********988887773.2234466666******************************************9999999999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MASGSIEMNK NGLSSTSSIV VGEELRNEVV DDKNKTCRHP RWTRPETLVL IEGKKIAEDR 60 RRGCGASSVL DCAQIKPKWD LVSSYCKQNG VNRGPVQCRK RWSNLISDFK KIRTWELQVK 120 EERDSYWMMM NDLRKVGKLP GFFDREIYDV LEGKAFIAAE HQLAVVTLGT DANTGNHMET 180 GEGGDEVQDN GKAQQVLGSG HHKTADSVNL SDFEPTPQWN GDDSTEEGIT PDKPTITIPS 240 PVSISAEKNC QPLRQACPYP AKGEQSGSHF WKGPPLQKGV KRRRLFSDCC ENSNLEDCLA 300 KVMERNSNML NAELEARNMN VQLDREQCKE QSESLVAALN KIGDALVRIA DKL

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MASGSIEMNK NGLSSTSSIV VGEELRNEVV DDKNKTCRHP RWTRPETLVL IEGKKIAEDR  60
RRGCGASSVL DCAQIKPKWD LVSSYCKQNG VNRGPVQCRK RWSNLISDFK KIRTWELQVK  120
EERDSYWMMM NDLRKVGKLP GFFDREIYDV LEGKAFIAAE HQLAVVTLGT DANTGNHMET  180
GEGGDEVQDN GKAQQVLGSG HHKTADSVNL SDFEPTPQWN GDDSTEEGIT PDKPTITIPS  240
PVSISAEKNC QPLRQACPYP AKGEQSGSHF WKGPPLQKGV KRRRLFSDCC ENSNLEDCLA  300
KVMERNSNML NAELEARNMN VQLDREQCKE QSESLVAALN KIGDALVRIA DKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	281	285	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	6e-55	Trihelix family protein