PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019168806.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 210aa    MW: 23500 Da    PI: 9.5443
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019168806.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.24.5e-181658345
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    i ++snr++tf kR++ + KKA ELSvLC++ v+ ++ s+  +
  XP_019168806.1 16 ITDDSNRKTTFKKRKKSLVKKARELSVLCGVTVCAVVCSPFRE 58
                    889***********************************98665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MAATPSASRK RILTYITDDS NRKTTFKKRK KSLVKKAREL SVLCGVTVCA VVCSPFREIE  60
TEVFPDEGGV REAYARFKGM TQVEQTRRKY SQETITEERY EKVKSKALKV STGNQEKEMT  120
EMMYQYLSGQ LMSLPAMNLV HLNDLAVVTQ RHLERITEKL AALGKEGDSV LMPPPPPRAP  180
ASMDMGGGMR NDEGNGMYVN TNNRPEGPAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1931RKRILTYITDDSNRKTTFKKRKK
22731KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-22M-type_MADS family protein