PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019168856.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 337aa MW: 38124.3 Da PI: 6.2271

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019168856.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.9	3.5e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l +++ +G g+W+ ++++ g+ R++k+c++rw +yl XP_019168856.1 14 RGLWSPEEDEKLTRYISTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	54.4	2.8e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+T+eE++l+++++ G++ W+ Ia++++ gRt++++k++w+++ XP_019168856.1 67 RGRFTPEEEKLIINLHGAVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111 89******************.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence
MGHHSCCNQQ KVKRGLWSPE EDEKLTRYIS THGYGCWSEV PEKAGLQRCG KSCRLRWINY 60 LRPDIRRGRF TPEEEKLIIN LHGAVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKLKKPQ 120 STSHHHHHHQ TTTTSIIGTN NNIDTQQQIQ FPFNNINPAN NDQRFFTQDL ATKPLQFQET 180 LFSTPNIITN IAPFFTFDTA AIASLGDCSA NRVDPLFQDS DEFWQQQIQT TTTSFGSGGM 240 GSGYFLPPLM DDLGPLDNVP PTNLQFDEGQ AARDNQVSEW GVDPTQQQQQ RQQLQQCPAG 300 SSYLLWDDVT EGNLGGEEEL IGVPTTSPML SSFPPSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63910.1	3e-83	MYB family protein